IL_8CGN_209

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_209 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0921

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8CGN|1|c|G|1111
8CGN|1|c|G|1112
8CGN|1|c|A|1113
8CGN|1|c|G|1114
8CGN|1|c|U|1115
8CGN|1|c|A|1116
8CGN|1|c|U|1117
8CGN|1|c|G|1118
*
8CGN|1|c|U|1129
8CGN|1|c|G|1130
8CGN|1|c|A|1131
8CGN|1|c|A|1132
8CGN|1|c|A|1133
8CGN|1|c|C|1134

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Z

60S ribosomal protein L41

Chain z

40S ribosomal protein S23-A