IL_8CGN_232

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8CGN|1|c|C|1637, 8CGN|1|c|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_232 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1928

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8CGN|1|c|C|1636
8CGN|1|c|C|1637
8CGN|1|c|G|1638
*
8CGN|1|c|C|1764
8CGN|1|c|A|1765
8CGN|1|c|A|1766
8CGN|1|c|G|1767

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 2

40S ribosomal protein S26

Chain Bb

Transfer RNA; tRNA

Chain Dd

Messenger RNA