IL_8CGN_255

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_255 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0683

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8CGN|1|AA|G|2823
8CGN|1|AA|G|2824
8CGN|1|AA|C|2825
8CGN|1|AA|U|2826
*
8CGN|1|AA|G|2863
8CGN|1|AA|A|2864
8CGN|1|AA|U|2865
8CGN|1|AA|U|2866
8CGN|1|AA|C|2867

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29