IL_8CGN_259

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

(OMG)UGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

8CGN|1|c|A|579, 8CGN|1|c|U|581, 8CGN|1|c|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_259 not in the Motif Atlas

Homologous match to IL_8P9A_404

Geometric discrepancy: 0.1549

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8CGN|1|c|OMG|562
8CGN|1|c|U|563
8CGN|1|c|G|564
8CGN|1|c|C|565
8CGN|1|c|C|566
8CGN|1|c|A|567
8CGN|1|c|G|568
*
8CGN|1|c|C|575
8CGN|1|c|G|576
8CGN|1|c|G|577
8CGN|1|c|OMU|578
8CGN|1|c|A|579
8CGN|1|c|A|580
8CGN|1|c|U|581
8CGN|1|c|U|582
8CGN|1|c|C|583

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain g

RPS3 isoform 1

Chain z

40S ribosomal protein S23-A