3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
CAG*CAGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGR_020 not in the Motif Atlas
Homologous match to IL_5J7L_021
Geometric discrepancy: 0.0673
The information below is about IL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_33323.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8CGR|1|A|C|440
8CGR|1|A|A|441
8CGR|1|A|G|442
*
8CGR|1|A|C|492
8CGR|1|A|A|493
8CGR|1|A|G|494
8CGR|1|A|A|495
8CGR|1|A|A|496
8CGR|1|A|G|497

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4

Coloring options:


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