3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
8CGR|1|A|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGR_031 not in the Motif Atlas
Homologous match to IL_5J7L_033
Geometric discrepancy: 0.0356
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8CGR|1|A|U|662
8CGR|1|A|A|663
8CGR|1|A|G|664
8CGR|1|A|A|665
8CGR|1|A|G|666
*
8CGR|1|A|U|740
8CGR|1|A|G|741
8CGR|1|A|G|742
8CGR|1|A|A|743

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
Small ribosomal subunit protein bS6, non-modified isoform
Chain O
Small ribosomal subunit protein uS15
Chain R
Small ribosomal subunit protein bS18

Coloring options:


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