IL_8CGR_039

3D structure

PDB id

8CGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apramycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8CGR|1|A|C|1400, 8CGR|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGR_039 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0435

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8CGR|1|A|C|1399
8CGR|1|A|C|1400
8CGR|1|A|G|1401
*
8CGR|1|A|C|1501
8CGR|1|A|A|1502
8CGR|1|A|A|1503
8CGR|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5