IL_8CGR_049

3D structure

PDB id

8CGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apramycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGR_049 not in the Motif Atlas

Homologous match to IL_5J7L_361

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8CGR|1|A|A|673
8CGR|1|A|G|674
8CGR|1|A|A|675
8CGR|1|A|A|676
8CGR|1|A|U|677
*
8CGR|1|A|G|713
8CGR|1|A|G|714
8CGR|1|A|A|715
8CGR|1|A|A|716
8CGR|1|A|U|717

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS6, non-modified isoform

Chain K

Small ribosomal subunit protein uS11

Chain R

Small ribosomal subunit protein bS18

Chain U

Small ribosomal subunit protein bS21