IL_8CGU_022

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGU_022 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0728

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8CGU|1|A|G|450
8CGU|1|A|A|451
8CGU|1|A|A|452
8CGU|1|A|G|453
8CGU|1|A|G|454
8CGU|1|A|G|455
*
8CGU|1|A|C|477
8CGU|1|A|A|478
8CGU|1|A|U|479
8CGU|1|A|U|480
8CGU|1|A|G|481
8CGU|1|A|A|482
8CGU|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16