IL_8CGU_030

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CUC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGU_030 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2492

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8CGU|1|A|C|658
8CGU|1|A|U|659
8CGU|1|A|C|660
*
8CGU|1|A|G|745
8CGU|1|A|A|746
8CGU|1|A|A|747
8CGU|1|A|G|748

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS15