IL_8CGU_031

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8CGU|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGU_031 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.042

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8CGU|1|A|U|662
8CGU|1|A|A|663
8CGU|1|A|G|664
8CGU|1|A|A|665
8CGU|1|A|G|666
*
8CGU|1|A|U|740
8CGU|1|A|G|741
8CGU|1|A|G|742
8CGU|1|A|A|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS6, non-modified isoform

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18