3D structure

PDB id
8CGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Gentamicin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.89 Å

Loop

Sequence
AGAAU*GGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGU_048 not in the Motif Atlas
Homologous match to IL_5J7L_361
Geometric discrepancy: 0.0599
The information below is about IL_5J7L_361
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

8CGU|1|A|A|673
8CGU|1|A|G|674
8CGU|1|A|A|675
8CGU|1|A|A|676
8CGU|1|A|U|677
*
8CGU|1|A|G|713
8CGU|1|A|G|714
8CGU|1|A|A|715
8CGU|1|A|A|716
8CGU|1|A|U|717

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
Small ribosomal subunit protein bS6, non-modified isoform
Chain K
Small ribosomal subunit protein uS11
Chain R
Small ribosomal subunit protein bS18
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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