3D structure

PDB id
8CGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Gentamicin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.89 Å

Loop

Sequence
(5MC)AC*GAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGU_050 not in the Motif Atlas
Homologous match to IL_4LFB_070
Geometric discrepancy: 0.1296
The information below is about IL_4LFB_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31531.3
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
13

Unit IDs

8CGU|1|A|5MC|1407
8CGU|1|A|A|1408
8CGU|1|A|C|1409
*
8CGU|1|A|G|1491
8CGU|1|A|A|1492
8CGU|1|A|A|1493
8CGU|1|A|G|1494

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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