IL_8CGV_018

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8CGV|1|a|G|801, 8CGV|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGV_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0446

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|G|674
8CGV|1|a|A|675
8CGV|1|a|A|676
8CGV|1|a|A|677
8CGV|1|a|C|678
*
8CGV|1|a|G|799
8CGV|1|a|A|800
8CGV|1|a|G|801
8CGV|1|a|A|802
8CGV|1|a|U|803
8CGV|1|a|A|804
8CGV|1|a|G|805
8CGV|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

50S ribosomal protein L15