3D structure

PDB id
8CGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tiamulin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.66 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
8CGV|1|a|G|776, 8CGV|1|a|A|788, 8CGV|1|a|A|789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGV_023 not in the Motif Atlas
Homologous match to IL_5J7L_265
Geometric discrepancy: 0.0734
The information below is about IL_5J7L_265
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

8CGV|1|a|G|775
8CGV|1|a|G|776
8CGV|1|a|G|777
*
8CGV|1|a|C|787
8CGV|1|a|A|788
8CGV|1|a|A|789
8CGV|1|a|U|790
8CGV|1|a|C|791

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain c
Large ribosomal subunit protein uL2
Chain e
Large ribosomal subunit protein uL4
Chain r
Large ribosomal subunit protein uL22

Coloring options:


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