3D structure

PDB id
8CGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tiamulin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.66 Å

Loop

Sequence
GAAG*CGGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGV_039 not in the Motif Atlas
Homologous match to IL_5J7L_283
Geometric discrepancy: 0.1233
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8CGV|1|a|G|1038
8CGV|1|a|A|1039
8CGV|1|a|A|1040
8CGV|1|a|G|1041
*
8CGV|1|a|C|1114
8CGV|1|a|G|1115
8CGV|1|a|G|1116
8CGV|1|a|C|1117

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL36A
Chain g
Large ribosomal subunit protein uL6
Chain l
Large ribosomal subunit protein uL16
Chain u
50S ribosomal protein L25

Coloring options:


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