IL_8CGV_109

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGV_109 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0252

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|G|1666
8CGV|1|a|G|1667
8CGV|1|a|A|1668
8CGV|1|a|A|1669
8CGV|1|a|C|1670
8CGV|1|a|U|1671
8CGV|1|a|A|1672
8CGV|1|a|G|1673
8CGV|1|a|G|1674
*
8CGV|1|a|C|1990
8CGV|1|a|U|1991
8CGV|1|a|G|1992
8CGV|1|a|U|1993
8CGV|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14