IL_8CIV_015

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAAC*GAGUGAAAAAGUAC

Length

18 nucleotides

Bulged bases

8CIV|1|AA|A|398, 8CIV|1|AA|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_015 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.1498

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8CIV|1|AA|G|376
8CIV|1|AA|A|377
8CIV|1|AA|A|378
8CIV|1|AA|C|379
*
8CIV|1|AA|G|390
8CIV|1|AA|A|391
8CIV|1|AA|G|392
8CIV|1|AA|U|393
8CIV|1|AA|G|394
8CIV|1|AA|A|395
8CIV|1|AA|A|396
8CIV|1|AA|A|397
8CIV|1|AA|A|398
8CIV|1|AA|A|399
8CIV|1|AA|G|400
8CIV|1|AA|U|401
8CIV|1|AA|A|402
8CIV|1|AA|C|403

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain K

60S ribosomal protein L26-A

Chain X

60S ribosomal protein L39