IL_8CIV_031

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8CIV|1|AA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_031 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.1869

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8CIV|1|AA|A|828
8CIV|1|AA|U|829
*
8CIV|1|AA|A|895
8CIV|1|AA|A|896
8CIV|1|AA|U|897

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain S

60S ribosomal protein L34-A