IL_8CIV_093

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_093 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.0711

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8CIV|1|AA|G|2276
8CIV|1|AA|C|2277
*
8CIV|1|AA|G|2307
8CIV|1|AA|C|2308
8CIV|1|AA|A|2309
8CIV|1|AA|U|2310

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain Z

60S ribosomal protein L41

Chain c

Small subunit ribosomal RNA; SSU rRNA