IL_8CIV_096

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8CIV|1|AA|A|2397, 8CIV|1|AA|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_096 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.0636

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CIV|1|AA|G|2396
8CIV|1|AA|A|2397
8CIV|1|AA|A|2398
*
8CIV|1|AA|U|2981
8CIV|1|AA|A|2982
8CIV|1|AA|C|2983
8CIV|1|AA|C|2984

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3