IL_8CIV_098

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8CIV|1|AA|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_098 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.0702

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8CIV|1|AA|G|2412
8CIV|1|AA|A|2413
*
8CIV|1|AA|U|2807
8CIV|1|AA|A|2808
8CIV|1|AA|C|2809
8CIV|1|AA|C|2810

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain EE

60S ribosomal protein L2-A

Chain Pp

Polypeptide