IL_8CIV_142

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8CIV|1|AA|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_142 not in the Motif Atlas

Geometric match to IL_5TBW_130

Geometric discrepancy: 0.2846

The information below is about IL_5TBW_130

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8CIV|1|AA|G|3318
8CIV|1|AA|U|3319
8CIV|1|AA|A|3320
*
8CIV|1|AA|U|3387
8CIV|1|AA|C|3388

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain P

60S ribosomal protein L31-A