IL_8CIV_160
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UCU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CIV_160 not in the Motif Atlas
- Homologous match to IL_4V88_385
- Geometric discrepancy: 0.1024
- The information below is about IL_4V88_385
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8CIV|1|c|U|35
8CIV|1|c|C|36
8CIV|1|c|U|37
*
8CIV|1|c|A|471
8CIV|1|c|U|472
8CIV|1|c|A|473
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S24-A
- Chain m
- 40S ribosomal protein S9-A
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