IL_8CIV_189

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

8CIV|1|c|A|579, 8CIV|1|c|U|581, 8CIV|1|c|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|c|G|561
8CIV|1|c|OMG|562
8CIV|1|c|U|563
8CIV|1|c|G|564
8CIV|1|c|C|565
8CIV|1|c|C|566
8CIV|1|c|A|567
8CIV|1|c|G|568
*
8CIV|1|c|C|575
8CIV|1|c|G|576
8CIV|1|c|G|577
8CIV|1|c|OMU|578
8CIV|1|c|A|579
8CIV|1|c|A|580
8CIV|1|c|U|581
8CIV|1|c|U|582
8CIV|1|c|C|583
8CIV|1|c|C|584

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain Aa

Elongation factor 2

Chain g

RPS3 isoform 1

Chain z

40S ribosomal protein S23-A