IL_8CIV_213
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8CIV|1|c|C|1158, 8CIV|1|c|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CIV_213 not in the Motif Atlas
- Geometric match to IL_1KOG_007
- Geometric discrepancy: 0.1748
- The information below is about IL_1KOG_007
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
8CIV|1|c|A|1157
8CIV|1|c|C|1158
8CIV|1|c|C|1159
8CIV|1|c|A|1160
*
8CIV|1|c|U|1617
8CIV|1|c|C|1618
8CIV|1|c|C|1619
8CIV|1|c|C|1620
8CIV|1|c|U|1621
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein S28-A
- Chain Cc
- Transfer RNA; tRNA
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain w
- 40S ribosomal protein S20
Coloring options: