IL_8CIV_217

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

8CIV|1|c|A|1227, 8CIV|1|c|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|c|A|1224
8CIV|1|c|U|1225
8CIV|1|c|A|1226
8CIV|1|c|A|1227
8CIV|1|c|G|1228
8CIV|1|c|G|1229
8CIV|1|c|A|1230
8CIV|1|c|U|1231
8CIV|1|c|U|1232
8CIV|1|c|G|1233
*
8CIV|1|c|C|1252
8CIV|1|c|U|1253
8CIV|1|c|U|1254
8CIV|1|c|G|1255
8CIV|1|c|A|1256
8CIV|1|c|U|1257
8CIV|1|c|U|1258
8CIV|1|c|U|1259

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A