IL_8CIV_220
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8CIV|1|c|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CIV_220 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1633
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CIV|1|c|U|1272
8CIV|1|c|G|1273
8CIV|1|c|C|1274
8CIV|1|c|A|1275
8CIV|1|c|U|1276
*
8CIV|1|c|A|1436
8CIV|1|c|U|1437
8CIV|1|c|G|1438
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain Aa
- Elongation factor 2
- Chain Bb
- Transfer RNA; tRNA
- Chain g
- RPS3 isoform 1
- Chain n
- 40S ribosomal protein S10-A
- Chain w
- 40S ribosomal protein S20
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