IL_8CIV_249

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UCUAGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

8CIV|1|AA|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|AA|U|1218
8CIV|1|AA|C|1219
8CIV|1|AA|U|1220
8CIV|1|AA|A|1221
8CIV|1|AA|G|1222
8CIV|1|AA|A|1223
8CIV|1|AA|C|1224
8CIV|1|AA|A|1225
8CIV|1|AA|G|1226
8CIV|1|AA|C|1227
*
8CIV|1|AA|G|1282
8CIV|1|AA|C|1283
8CIV|1|AA|C|1284
8CIV|1|AA|G|1285
8CIV|1|AA|A|1286
8CIV|1|AA|A|1287

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain E

60S ribosomal protein L20-A

Chain Y

Ubiquitin-60S ribosomal protein L40