IL_8CIV_253
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GGAAGUCGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CIV_253 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0505
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8CIV|1|AA|G|1898
8CIV|1|AA|G|1899
8CIV|1|AA|A|1900
8CIV|1|AA|A|1901
8CIV|1|AA|G|1902
8CIV|1|AA|U|1903
8CIV|1|AA|C|1904
8CIV|1|AA|G|1905
8CIV|1|AA|G|1906
*
8CIV|1|AA|C|2333
8CIV|1|AA|U|2334
8CIV|1|AA|G|2335
8CIV|1|AA|U|2336
8CIV|1|AA|OMC|2337
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
- Chain I
- 60S ribosomal protein L24-A
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