IL_8CIV_256

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUAC

Length

38 nucleotides

Bulged bases

8CIV|1|AA|U|2453, 8CIV|1|AA|U|2460, 8CIV|1|AA|G|2463, 8CIV|1|AA|U|2464, 8CIV|1|AA|A|2468, 8CIV|1|AA|C|2479, 8CIV|1|AA|A|2480, 8CIV|1|AA|G|2481, 8CIV|1|AA|A|2488

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|AA|G|2452
8CIV|1|AA|U|2453
8CIV|1|AA|G|2454
8CIV|1|AA|U|2455
8CIV|1|AA|A|2456
8CIV|1|AA|G|2457
8CIV|1|AA|A|2458
8CIV|1|AA|A|2459
8CIV|1|AA|U|2460
8CIV|1|AA|A|2461
8CIV|1|AA|A|2462
8CIV|1|AA|G|2463
8CIV|1|AA|U|2464
8CIV|1|AA|G|2465
8CIV|1|AA|G|2466
8CIV|1|AA|G|2467
8CIV|1|AA|A|2468
8CIV|1|AA|G|2469
*
8CIV|1|AA|C|2476
8CIV|1|AA|G|2477
8CIV|1|AA|C|2478
8CIV|1|AA|C|2479
8CIV|1|AA|A|2480
8CIV|1|AA|G|2481
8CIV|1|AA|U|2482
8CIV|1|AA|G|2483
8CIV|1|AA|A|2484
8CIV|1|AA|A|2485
8CIV|1|AA|A|2486
8CIV|1|AA|U|2487
8CIV|1|AA|A|2488
8CIV|1|AA|C|2489
8CIV|1|AA|C|2490
8CIV|1|AA|A|2491
8CIV|1|AA|C|2492
8CIV|1|AA|U|2493
8CIV|1|AA|A|2494
8CIV|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA