IL_8CIV_262

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAGUA*UAACGAGG(A2M)AC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|c|G|514
8CIV|1|c|A|515
8CIV|1|c|G|516
8CIV|1|c|U|517
8CIV|1|c|A|518
*
8CIV|1|c|U|533
8CIV|1|c|A|534
8CIV|1|c|A|535
8CIV|1|c|C|536
8CIV|1|c|G|537
8CIV|1|c|A|538
8CIV|1|c|G|539
8CIV|1|c|G|540
8CIV|1|c|A2M|541
8CIV|1|c|A|542
8CIV|1|c|C|543

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A