IL_8CKU_010

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGGG*CUUUGUA

Length

11 nucleotides

Bulged bases

8CKU|1|AA|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|AA|U|169
8CKU|1|AA|G|170
8CKU|1|AA|G|171
8CKU|1|AA|G|172
*
8CKU|1|AA|C|247
8CKU|1|AA|U|248
8CKU|1|AA|U|249
8CKU|1|AA|U|250
8CKU|1|AA|G|251
8CKU|1|AA|U|252
8CKU|1|AA|A|253

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain OO

60S ribosomal protein L13-A

Chain T

60S ribosomal protein L35-A