IL_8CKU_044

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUCCGGG*CUUGA

Length

12 nucleotides

Bulged bases

8CKU|1|AA|U|1015, 8CKU|1|AA|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|AA|U|1014
8CKU|1|AA|U|1015
8CKU|1|AA|C|1016
8CKU|1|AA|C|1017
8CKU|1|AA|G|1018
8CKU|1|AA|G|1019
8CKU|1|AA|G|1020
*
8CKU|1|AA|C|1032
8CKU|1|AA|U|1033
8CKU|1|AA|U|1034
8CKU|1|AA|G|1035
8CKU|1|AA|A|1036

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain HH

60S ribosomal protein L5

Chain MM

60S ribosomal protein L10

Chain NN

60S ribosomal protein L11-A