IL_8CKU_045

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_045 not in the Motif Atlas

Homologous match to IL_8C3A_047

Geometric discrepancy: 0.1379

The information below is about IL_8C3A_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8CKU|1|AA|C|1069
8CKU|1|AA|U|1070
8CKU|1|AA|U|1071
*
8CKU|1|AA|G|1087
8CKU|1|AA|U|1088
8CKU|1|AA|G|1089

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L29