IL_8CKU_099

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAUAGAGG*CUUUAUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|AA|C|2444
8CKU|1|AA|A|2445
8CKU|1|AA|U|2446
8CKU|1|AA|A|2447
8CKU|1|AA|G|2448
8CKU|1|AA|A|2449
8CKU|1|AA|G|2450
8CKU|1|AA|G|2451
*
8CKU|1|AA|C|2496
8CKU|1|AA|U|2497
8CKU|1|AA|U|2498
8CKU|1|AA|U|2499
8CKU|1|AA|A|2500
8CKU|1|AA|U|2501
8CKU|1|AA|A|2502
8CKU|1|AA|G|2503

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA

Chain e

40S ribosomal protein S1-A