3D structure

PDB id
8CKU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
8CKU|1|AA|A|2971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CKU_119 not in the Motif Atlas
Geometric match to IL_5J7L_344
Geometric discrepancy: 0.3022
The information below is about IL_5J7L_344
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

8CKU|1|AA|C|2960
8CKU|1|AA|G|2961
*
8CKU|1|AA|C|2970
8CKU|1|AA|A|2971
8CKU|1|AA|G|2972

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain Bb
Transfer RNA; tRNA
Chain EE
60S ribosomal protein L2-A
Chain MM
60S ribosomal protein L10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1075 s