IL_8CKU_119
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8CKU|1|AA|A|2971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_119 not in the Motif Atlas
- Geometric match to IL_5J7L_344
- Geometric discrepancy: 0.3022
- The information below is about IL_5J7L_344
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
8CKU|1|AA|C|2960
8CKU|1|AA|G|2961
*
8CKU|1|AA|C|2970
8CKU|1|AA|A|2971
8CKU|1|AA|G|2972
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Bb
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain MM
- 60S ribosomal protein L10
Coloring options: