IL_8CKU_129
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8CKU|1|AA|A|3178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_129 not in the Motif Atlas
- Geometric match to IL_5TBW_123
- Geometric discrepancy: 0.1043
- The information below is about IL_5TBW_123
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8CKU|1|AA|G|3177
8CKU|1|AA|A|3178
8CKU|1|AA|U|3179
*
8CKU|1|AA|A|3210
8CKU|1|AA|C|3211
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain E
- 60S ribosomal protein L20-A
- Chain II
- 60S ribosomal protein L6-A
- Chain PP
- 60S ribosomal protein L14-A
- Chain R
- 60S ribosomal protein L33-A
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