IL_8CKU_180

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAUAC*GUAAUUG

Length

13 nucleotides

Bulged bases

8CKU|1|c|A|505, 8CKU|1|c|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|c|C|479
8CKU|1|c|G|480
8CKU|1|c|A|481
8CKU|1|c|U|482
8CKU|1|c|A|483
8CKU|1|c|C|484
*
8CKU|1|c|G|503
8CKU|1|c|U|504
8CKU|1|c|A|505
8CKU|1|c|A|506
8CKU|1|c|U|507
8CKU|1|c|U|508
8CKU|1|c|G|509

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A