IL_8CKU_186
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- G(OMG)UGCCAG*CGG(OMU)AAUUCC
- Length
- 18 nucleotides
- Bulged bases
- 8CKU|1|c|A|579, 8CKU|1|c|U|581
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CKU|1|c|G|561
8CKU|1|c|OMG|562
8CKU|1|c|U|563
8CKU|1|c|G|564
8CKU|1|c|C|565
8CKU|1|c|C|566
8CKU|1|c|A|567
8CKU|1|c|G|568
*
8CKU|1|c|C|575
8CKU|1|c|G|576
8CKU|1|c|G|577
8CKU|1|c|OMU|578
8CKU|1|c|A|579
8CKU|1|c|A|580
8CKU|1|c|U|581
8CKU|1|c|U|582
8CKU|1|c|C|583
8CKU|1|c|C|584
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S30-A
- Chain Aa
- Elongation factor 2
- Chain Bb
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain g
- RPS3 isoform 1
- Chain z
- 40S ribosomal protein S23-A
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