IL_8CKU_195

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAAAAAUU*AUU(A2M)GC

Length

15 nucleotides

Bulged bases

8CKU|1|c|U|795

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|c|G|751
8CKU|1|c|A|752
8CKU|1|c|A|753
8CKU|1|c|A|754
8CKU|1|c|A|755
8CKU|1|c|A|756
8CKU|1|c|A|757
8CKU|1|c|U|758
8CKU|1|c|U|759
*
8CKU|1|c|A|793
8CKU|1|c|U|794
8CKU|1|c|U|795
8CKU|1|c|A2M|796
8CKU|1|c|G|797
8CKU|1|c|C|798

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain m

40S ribosomal protein S9-A

Chain o

40S ribosomal protein S11-A

Chain y

40S ribosomal protein S22-A