IL_8CKU_229
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GGGAUAG*CUUCAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_229 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.3374
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8CKU|1|c|G|1540
8CKU|1|c|G|1541
8CKU|1|c|G|1542
8CKU|1|c|A|1543
8CKU|1|c|U|1544
8CKU|1|c|A|1545
8CKU|1|c|G|1546
*
8CKU|1|c|C|1565
8CKU|1|c|U|1566
8CKU|1|c|U|1567
8CKU|1|c|C|1568
8CKU|1|c|A|1569
8CKU|1|c|A|1570
8CKU|1|c|C|1571
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain i
- 40S ribosomal protein S5
- Chain u
- 40S ribosomal protein S18-A
- Chain v
- 40S ribosomal protein S19-A
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