IL_8CKU_238
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_238 not in the Motif Atlas
- Geometric match to IL_1SAQ_002
- Geometric discrepancy: 0.1499
- The information below is about IL_1SAQ_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8CKU|1|c|U|1669
8CKU|1|c|G|1670
8CKU|1|c|A|1671
8CKU|1|c|G|1672
*
8CKU|1|c|C|1729
8CKU|1|c|A|1730
8CKU|1|c|A|1731
8CKU|1|c|A|1732
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L23-A
- Chain I
- 60S ribosomal protein L24-A
- Chain j
- 40S ribosomal protein S6-A
- Chain l
- 40S ribosomal protein S8-A
Coloring options: