IL_8CKU_243

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CKU_243 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1263

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8CKU|1|c|C|1772
8CKU|1|c|4AC|1773
8CKU|1|c|G|1774
*
8CKU|1|c|C|1787
8CKU|1|c|G|1788
8CKU|1|c|G|1789

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 2

40S ribosomal protein S26

Chain Z

RPL41A isoform 1

Chain q

40S ribosomal protein S14-A