IL_8CKU_247

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAUUAGA*UAUUCUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|AA|G|1005
8CKU|1|AA|A|1006
8CKU|1|AA|U|1007
8CKU|1|AA|U|1008
8CKU|1|AA|A|1009
8CKU|1|AA|G|1010
8CKU|1|AA|A|1011
*
8CKU|1|AA|U|1039
8CKU|1|AA|A|1040
8CKU|1|AA|U|1041
8CKU|1|AA|U|1042
8CKU|1|AA|C|1043
8CKU|1|AA|U|1044
8CKU|1|AA|C|1045

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain Bb

Transfer RNA; tRNA

Chain HH

60S ribosomal protein L5

Chain MM

60S ribosomal protein L10