IL_8CKU_263
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- ACCAC*GUCCCU
- Length
- 11 nucleotides
- Bulged bases
- 8CKU|1|c|C|1158, 8CKU|1|c|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CKU|1|c|A|1157
8CKU|1|c|C|1158
8CKU|1|c|C|1159
8CKU|1|c|A|1160
8CKU|1|c|C|1161
*
8CKU|1|c|G|1616
8CKU|1|c|U|1617
8CKU|1|c|C|1618
8CKU|1|c|C|1619
8CKU|1|c|C|1620
8CKU|1|c|U|1621
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain 4
- 40S ribosomal protein S28-A
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
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