IL_8CKU_264
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CAAUAAGGAUUG*CUUGAUUUUG
- Length
- 22 nucleotides
- Bulged bases
- 8CKU|1|c|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CKU_264 not in the Motif Atlas
- Homologous match to IL_8P9A_435
- Geometric discrepancy: 0.4227
- The information below is about IL_8P9A_435
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CKU|1|c|C|1222
8CKU|1|c|A|1223
8CKU|1|c|A|1224
8CKU|1|c|U|1225
8CKU|1|c|A|1226
8CKU|1|c|A|1227
8CKU|1|c|G|1228
8CKU|1|c|G|1229
8CKU|1|c|A|1230
8CKU|1|c|U|1231
8CKU|1|c|U|1232
8CKU|1|c|G|1233
*
8CKU|1|c|C|1252
8CKU|1|c|U|1253
8CKU|1|c|U|1254
8CKU|1|c|G|1255
8CKU|1|c|A|1256
8CKU|1|c|U|1257
8CKU|1|c|U|1258
8CKU|1|c|U|1259
8CKU|1|c|U|1260
8CKU|1|c|G|1261
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 8
- Ubiquitin-40S ribosomal protein S31
- Chain Aa
- Elongation factor 2
- Chain n
- 40S ribosomal protein S10-A
Coloring options: