IL_8CMJ_009

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GUA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CMJ_009 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1437

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8CMJ|1|AA|G|128
8CMJ|1|AA|U|129
8CMJ|1|AA|A|130
*
8CMJ|1|AA|U|138
8CMJ|1|AA|G|139
8CMJ|1|AA|C|140

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A

Chain T

60S ribosomal protein L35-A