IL_8CMJ_011

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UGGG*CUUUGUA

Length

11 nucleotides

Bulged bases

8CMJ|1|AA|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|U|169
8CMJ|1|AA|G|170
8CMJ|1|AA|G|171
8CMJ|1|AA|G|172
*
8CMJ|1|AA|C|247
8CMJ|1|AA|U|248
8CMJ|1|AA|U|249
8CMJ|1|AA|U|250
8CMJ|1|AA|G|251
8CMJ|1|AA|U|252
8CMJ|1|AA|A|253

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain KK

60S ribosomal protein L8-A

Chain OO

60S ribosomal protein L13-A

Chain T

60S ribosomal protein L35-A