IL_8CMJ_018
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CMJ_018 not in the Motif Atlas
- Homologous match to IL_5TBW_016
- Geometric discrepancy: 0.14
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8CMJ|1|AA|U|429
8CMJ|1|AA|U|430
8CMJ|1|AA|U|431
*
8CMJ|1|AA|A|628
8CMJ|1|AA|U|629
8CMJ|1|AA|A|630
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Q
- 60S ribosomal protein L32
- Chain R
- 60S ribosomal protein L33-A
Coloring options: